The metacor, which is developed based on the classical frequentist theory, is a specified package for performing meta-analysis of correlation coefficients in R software. This package was officially launched in 2011. Based on the DerSimonian-Laird method and Olkin-Pratt method, correlation coefficients can be directly pooled by using this package. The metacor package also can be used to draw the forest plot and is easy to use; however, it still needs to be improved. This paper briefly introduced how to perform a meta-analysis of correlation coefficients using the metacor package in R software through an example.
The method of network meta-analysis of diagnostic test accuracy is in the exploratory stage. We had explored and introduced several methods of network meta-analysis of diagnostic test accuracy before. Based on example, we introduce ANOVA model for performing network meta-analysis of diagnostic test accuracy step-by-step.
ObjectiveTo introduce the method of meta-analysis for effect combination of regression coefficient conducted with the metafor package in R software. MethodsBy using the data of a published meta-analysis as an example, the detailed process of meta-analysis for regression coefficient was presented with metafor package in R. ResultsThe results of meta-analysis conducted with metaphor package in R were the same as the published literature. ConclusionAs a completely free open source software for statistical analysis, R can conduct meta-analysis for effect combination of regression coefficient flexibly and precisely, and should be expanded in the future meta-analysis.
In systematic reviews and meta-analyses, time-to-event outcomes were mostly analysed using hazard ratios (HR). It was neglected transformation of the data so that some wrong outcomes were gained. This study introduces how to use Stata and R software to calculate the HR correctly if the report presents HR and confidence intervals were gained.
R software is a free, powerful statistical and graphing software, including metafor, meta as well as metaplus packages. They can be used to conduct meta-analysis. This article introduces detailed operations of the metaplus package for meta-analysis using cases.
The pcnetmeta package in R is a special package for performing network meta-analysis based on Bayesian theory, which combines the strength computing function of JAGS software and the special data integration and powerful graph drawing function of R software. This package conducts calculation by calling JAGS, provides 3 different models for users, and each model can yield results of 3 effect-sizes (RR, OR and RD). At the same time, this package can draw many kinds of plots, which greatly meets actual needs of users to deal with complicated network meta-analysis. In this article, we introduce how to use pcnetmeta package to perform network meta-analysis based on an example.
Network plots can clearly present the relationships among the direct comparisons of various interventions in a network meta-analysis. Currently, there are some methods of drawing network plots. However, the information provided by a network plot and the interface-friendly degree to a user differ in the kinds of software. This article briefly introduces how to draw network plots using the network package and gemtc package that base on R Software, Stata software, and ADDIS software, and it also compares the similarities and differences among them.
The paper presents two statistical methods to compare summary estimates of different subgroups in meta-analysis. It also shows how to use Z test and meta-regression model with dichotomous data and continuous data in R software to explain the similarities and differences between the two statistical methods by examples.
The theoretical foundation of relevant packages of R software for network meta-analysis is mainly based on Bayesian statistical model and a few of them use generalized linear model. Network meta-analysis is performed using GeMTC R package through calling the corresponding rjags package, BRugs package, or R2WinBUGS package (namely, JAGS, OpenBUGS, and WinBUGS software, respectively). Meanwhile, GeMTC R package can generate data storage files for GeMTC software. Techonically, network meta-analysis is performed through calling the software based on Markov Chain Monte Carlo method. In this article, we briefly introduce how to use GeMTC R package to perform network meta-analysis through calling the OpenBUGS software.
BUGSnet is a powerful R project package for Bayesian network meta-analysis. The package is based on JAGS and enables high-quality Bayesian network meta-analysis according to recognized reporting guidelines (PRISMA, ISPOR-AMPC-NCA and NICE-DSU). In this paper, we introduced the procedure of the BUGSnet package for Bayesian network meta-analysis through an example of network meta-analysis of steroid adjuvant treatment of pemphigus with continuous or dichotomous data.